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» Estimating dynamic models for gene regulation networks
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JMLR
2012
11 years 10 months ago
Bayesian regularization of non-homogeneous dynamic Bayesian networks by globally coupling interaction parameters
To relax the homogeneity assumption of classical dynamic Bayesian networks (DBNs), various recent studies have combined DBNs with multiple changepoint processes. The underlying as...
Marco Grzegorczyk, Dirk Husmeier
SDM
2009
SIAM
208views Data Mining» more  SDM 2009»
14 years 4 months ago
A Bayesian Approach Toward Finding Communities and Their Evolutions in Dynamic Social Networks.
Although a large body of work are devoted to finding communities in static social networks, only a few studies examined the dynamics of communities in evolving social networks. I...
Tianbao Yang, Yun Chi, Shenghuo Zhu, Yihong Gong, ...
ISMB
1994
13 years 9 months ago
An Improved System for Exon Recognition and Gene Modeling in Human DNA Sequence
A new version of the GRAIL system (Uberbacher and Mural, 1991; Mural et al., 1992; Uberbacher et al., 1993), called GRAILII, has recently been developed (Xu et al., 1994). GRAILII...
Yin Xu, J. Ralph Einstein, Richard J. Mural, Manes...
ECAI
2008
Springer
13 years 9 months ago
Temporal Logic Patterns for Querying Qualitative Models of Genetic Regulatory Networks
Formal verification based on model checking provides a powerful technology to query qualitative models of dynamical systems. The application of model-checking approaches is hamper...
Pedro T. Monteiro, Delphine Ropers, Radu Mateescu,...
CSB
2005
IEEE
116views Bioinformatics» more  CSB 2005»
14 years 1 months ago
Oscillatory dynamics in the mitogen-activated protein kinase cascade
We have used quantitative modeling of signaling networks to show that the mitogen-activated protein kinase cascade — a highly-conserved signaling network in eukaryotes — can f...
K.-H. Chiam, Vipul Bhargava, Gunaretnam Rajagopal