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IPPS
2009
IEEE
14 years 5 months ago
Evaluating the use of GPUs in liver image segmentation and HMMER database searches
In this paper we present the results of parallelizing two life sciences applications, Markov random fieldsbased (MRF) liver segmentation and HMMER’s Viterbi algorithm, using GP...
John Paul Walters, Vidyananth Balu, Suryaprakash K...
CP
2004
Springer
14 years 3 months ago
Counting-Based Look-Ahead Schemes for Constraint Satisfaction
Abstract. The paper presents a new look-ahead scheme for backtracking search for solving constraint satisfaction problems. This look-ahead scheme computes a heuristic for value ord...
Kalev Kask, Rina Dechter, Vibhav Gogate
BIBE
2007
IEEE
138views Bioinformatics» more  BIBE 2007»
14 years 4 months ago
A Flexible Stem-Based Local Search Algorithm for Predicting RNA Secondary Structures Including Pseudoknots
-We demonstrate a new algorithm named FlexStem to predict RNA secondary structures with pseudoknots. Our approach is based on the free energy minimization criterion, and utilizes a...
Xiang Chen, Simin He, Dongbo Bu, Runsheng Chen, We...
SAT
2009
Springer
91views Hardware» more  SAT 2009»
14 years 5 months ago
VARSAT: Integrating Novel Probabilistic Inference Techniques with DPLL Search
Probabilistic inference techniques can be used to estimate variable bias, or the proportion of solutions to a given SAT problem that fix a variable positively or negatively. Metho...
Eric I. Hsu, Sheila A. McIlraith
AMAI
2004
Springer
14 years 3 months ago
New Look-Ahead Schemes for Constraint Satisfaction
This paper presents new look-ahead schemes for backtracking search when solving constraint satisfaction problems. The look-ahead schemes compute a heuristic for value ordering and...
Kalev Kask, Rina Dechter, Vibhav Gogate