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» Evaluating Parallel Computing Systems in Bioinformatics
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HPDC
2010
IEEE
15 years 3 months ago
Modeling sequence and function similarity between proteins for protein functional annotation
A common task in biological research is to predict function for proteins by comparing sequences between proteins of known and unknown function. This is often done using pair-wise ...
Roger Higdon, Brenton Louie, Eugene Kolker
125
Voted
ICPP
2009
IEEE
15 years 9 months ago
Speeding Up Distributed MapReduce Applications Using Hardware Accelerators
—In an attempt to increase the performance/cost ratio, large compute clusters are becoming heterogeneous at multiple levels: from asymmetric processors, to different system archi...
Yolanda Becerra, Vicenç Beltran, David Carr...
118
Voted
IEEEPACT
2003
IEEE
15 years 8 months ago
Initial Observations of the Simultaneous Multithreading Pentium 4 Processor
This paper analyzes an Intel Pentium 4 hyper-threading processor. The focus is to understand its performance and the underlying reasons behind that performance. Particular attenti...
Nathan Tuck, Dean M. Tullsen
98
Voted
CLUSTER
2004
IEEE
15 years 6 months ago
NIC-based offload of dynamic user-defined modules for Myrinet clusters
Many of the modern networks used to interconnect nodes in cluster-based computing systems provide network interface cards (NICs) that offer programmable processors. Substantial re...
Adam Wagner, Hyun-Wook Jin, Dhabaleswar K. Panda, ...
ICPADS
2005
IEEE
15 years 8 months ago
A Model for Distributing and Querying a Data Warehouse on a Computing Grid
Data warehouses store large volumes of data according to a multidimensional model with dimensions representing different axes of analysis. OLAP systems (OnLine Analytical Processi...
Pascal Wehrle, Maryvonne Miquel, Anne Tchounikine