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BMCBI
2011
13 years 1 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...
JSS
2011
150views more  JSS 2011»
13 years 1 months ago
A novel general framework for automatic and cost-effective handling of recoverable temporal violations in scientific workflow sy
Due to the complex nature of scientific workflow environments, temporal violations often take place and may severely reduce the timeliness of the execution’s results. To handle ...
Xiao Liu, Zhiwei Ni, Zhangjun Wu, Dong Yuan, Jinju...
CORR
2011
Springer
199views Education» more  CORR 2011»
12 years 11 months ago
Surrogate Parenthood: Protected and Informative Graphs
Many applications, including provenance and some analyses of social networks, require path-based queries over graphstructured data. When these graphs contain sensitive information...
Barbara T. Blaustein, Adriane Chapman, Len Seligma...
BMCBI
2011
12 years 11 months ago
Robust joint analysis allowing for model uncertainty in two-stage genetic association studies
Background: The cost efficient two-stage design is often used in genome-wide association studies (GWASs) in searching for genetic loci underlying the susceptibility for complex di...
Dongdong Pan, Qizhai Li, Ningning Jiang, Aiyi Liu,...
BMCBI
2011
12 years 11 months ago
Efficient alignment of pyrosequencing reads for re-sequencing applications
Background: Over the past few years, new massively parallel DNA sequencing technologies have emerged. These platforms generate massive amounts of data per run, greatly reducing th...
Francisco Fernandes, Paulo G. S. da Fonseca, Lu&ia...