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BMCBI
2011
12 years 11 months ago
PeakRanger: A cloud-enabled peak caller for ChIP-seq data
Background: Chromatin immunoprecipitation (ChIP), coupled with massively parallel short-read sequencing (seq) is used to probe chromatin dynamics. Although there are many algorith...
Xin Feng, Robert Grossman, Lincoln Stein
BMCBI
2008
125views more  BMCBI 2008»
13 years 8 months ago
Disambiguation of biomedical text using diverse sources of information
Background: Like text in other domains, biomedical documents contain a range of terms with more than one possible meaning. These ambiguities form a significant obstacle to the aut...
Mark Stevenson, Yikun Guo, Robert J. Gaizauskas, D...
BMCBI
2005
124views more  BMCBI 2005»
13 years 8 months ago
Internet-based profiler system as integrative framework to support translational research
Background: Translational research requires taking basic science observations and developing them into clinically useful tests and therapeutics. We have developed a process to dev...
Robert Kim, Francesca Demichelis, Jeffery Tang, Al...
AAAI
2008
13 years 10 months ago
Concept-Based Feature Generation and Selection for Information Retrieval
Traditional information retrieval systems use query words to identify relevant documents. In difficult retrieval tasks, however, one needs access to a wealth of background knowled...
Ofer Egozi, Evgeniy Gabrilovich, Shaul Markovitch
BMCBI
2005
117views more  BMCBI 2005»
13 years 8 months ago
An SVM-based system for predicting protein subnuclear localizations
Background: The large gap between the number of protein sequences in databases and the number of functionally characterized proteins calls for the development of a fast computatio...
Zhengdeng Lei, Yang Dai