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ICSE
1999
IEEE-ACM
13 years 11 months ago
Lightweight Extraction of Object Models from Bytecode
A program’s object model captures the essence of its design. For some programs, no object model was developed during design; for others, an object model exists but may be out-of...
Daniel Jackson, Allison Waingold
BMCBI
2011
13 years 1 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...
PLDI
2011
ACM
12 years 10 months ago
Isolating and understanding concurrency errors using reconstructed execution fragments
In this paper we propose Recon, a new general approach to concurrency debugging. Recon goes beyond just detecting bugs, it also presents to the programmer short fragments of buggy...
Brandon Lucia, Benjamin P. Wood, Luis Ceze
BMCBI
2006
134views more  BMCBI 2006»
13 years 7 months ago
A statistical score for assessing the quality of multiple sequence alignments
Background: Multiple sequence alignment is the foundation of many important applications in bioinformatics that aim at detecting functionally important regions, predicting protein...
Virpi Ahola, Tero Aittokallio, Mauno Vihinen, Esa ...
JCB
2006
138views more  JCB 2006»
13 years 7 months ago
Recognition and Classification of Histones Using Support Vector Machine
Histones are DNA-binding proteins found in the chromatin of all eukaryotic cells. They are highly conserved and can be grouped into five major classes: H1/H5, H2A, H2B, H3, and H4...
Manoj Bhasin, Ellis L. Reinherz, Pedro A. Reche