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» Evaluation Measures of Multiple Sequence Alignments
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BMCBI
2008
86views more  BMCBI 2008»
13 years 7 months ago
Subfamily specific conservation profiles for proteins based on n-gram patterns
Background: A new algorithm has been developed for generating conservation profiles that reflect the evolutionary history of the subfamily associated with a query sequence. It is ...
John K. Vries, Xiong Liu
KCAP
2011
ACM
12 years 10 months ago
Let's agree to disagree: on the evaluation of vocabulary alignment
Gold standard mappings created by experts are at the core of alignment evaluation. At the same time, the process of manual evaluation is rarely discussed. While the practice of ha...
Anna Tordai, Jacco van Ossenbruggen, Guus Schreibe...
SPIRE
2001
Springer
14 years 3 days ago
Musical Sequence Comparison for Melodic and Rhythmic Similarities
We address the problem of musical sequence comparison for melodic similarity. Starting with a very simple similarity measure, we improve it step-by-step to finally obtain an acce...
T. Kadota, Masahiro Hirao, Akira Ishino, Masayuki ...
BMCBI
2005
162views more  BMCBI 2005»
13 years 7 months ago
Accelerated probabilistic inference of RNA structure evolution
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
Ian Holmes
ISMIR
2004
Springer
119views Music» more  ISMIR 2004»
14 years 1 months ago
Time Series Alignment for Music Information Retrieval
Time series representations are common in MIR applications such as query-by-humming, where a sung query might be represented by a series of ‘notes’ for database retrieval. Whi...
Norman H. Adams, Mark A. Bartsch, Jonah Shifrin, G...