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» Evolution of Biological Complexity
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FCCM
2009
IEEE
147views VLSI» more  FCCM 2009»
14 years 1 months ago
FPGA Accelerated Simulation of Biologically Plausible Spiking Neural Networks
Artificial neural networks are a key tool for researchers attempting to understand and replicate the behaviour and intelligence found in biological neural networks. Software simul...
David Thomas, Wayne Luk
JIB
2008
87views more  JIB 2008»
13 years 10 months ago
2.5D Visualisation of Overlapping Biological Networks
Biological data is often structured in the form of complex interconnected networks such as protein interaction and metabolic networks. In this paper, we investigate a new problem ...
David Cho Yau Fung, Seok-Hee Hong, Dirk Koschü...
RECOMB
2005
Springer
14 years 10 months ago
Decomposition of Overlapping Protein Complexes: A Graph Theoretical Method for Analyzing Static and Dynamic Protein Associations
Background: Most cellular processes are carried out by multi-protein complexes, groups of proteins that bind together to perform a specific task. Some proteins form stable complex...
Elena Zotenko, Katia S. Guimarães, Raja Jot...
BMCBI
2008
175views more  BMCBI 2008»
13 years 10 months ago
Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces
Background: Protein-protein interactions are ubiquitous and essential for all cellular processes. High-resolution X-ray crystallographic structures of protein complexes can reveal...
Andrew J. Bordner, Andrey A. Gorin
CMSB
2009
Springer
14 years 4 months ago
Computing Reachable States for Nonlinear Biological Models
Abstract. In this paper we describe reachability computation for continuous and hybrid systems and its potential contribution to the process of building and debugging biological mo...
Thao Dang, Colas Le Guernic, Oded Maler