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» Evolutionary Approaches to DNA Sequencing with Errors
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DASFAA
2003
IEEE
151views Database» more  DASFAA 2003»
14 years 3 months ago
Approximate String Matching in DNA Sequences
Approximate string matching on large DNA sequences data is very important in bioinformatics. Some studies have shown that suffix tree is an efficient data structure for approxim...
Lok-Lam Cheng, David Wai-Lok Cheung, Siu-Ming Yiu
BMCBI
2011
13 years 4 months ago
Errors in CGAP xProfiler and cDNA DGED: the importance of library parsing and gene selection algorithms
Background: The Cancer Genome Anatomy Project (CGAP) xProfiler and cDNA Digital Gene Expression Displayer (DGED) have been made available to the scientific community over a decade...
Andrew T. Milnthorpe, Mikhail Soloviev
PSB
2004
13 years 11 months ago
Phylogenetic Motif Detection by Expectation-Maximization on Evolutionary Mixtures
ct The preferential conservation of transcription factor binding sites implies that non-coding sequence data from related species will prove a powerful asset to motif discovery. We...
Alan M. Moses, Derek Y. Chiang, Michael B. Eisen
EMO
2006
Springer
117views Optimization» more  EMO 2006»
13 years 11 months ago
Multiplex PCR Assay Design by Hybrid Multiobjective Evolutionary Algorithm
Abstract. Multiplex Polymerase Chain Reaction (PCR) assay is to amplify multiple target DNAs simultaneously using different primer pairs for each target DNA. Recently, it is widely...
In-Hee Lee, Soo-Yong Shin, Byoung-Tak Zhang
IROS
2006
IEEE
96views Robotics» more  IROS 2006»
14 years 3 months ago
Topological Mapping Inspired by Techniques in DNA Sequence Alignment
Abstract— This paper introduces a method of building topological maps using sequences of images and the approximate string matching algorithm, which is commonly used in DNA seque...
Alan M. Zhang, Lindsay Kleeman, R. Andrew Russell