The standard dynamic programming solution to finding k-medians on a line with n nodes requires O(kn2 ) time. Dynamic programming speedup techniques, e.g., use of the quadrangle i...
We propose in this paper an exploratory analysis algorithm for functional data. The method partitions a set of functions into K clusters and represents each cluster by a simple pr...
Accurate prediction of pseudoknotted nucleic acid secondary structure is an important computational challenge. Prediction algorithms based on dynamic programming aim to find a st...
Divide and conquer algorithms are a good match for modern parallel machines: they tend to have large amounts of inherent parallelism and they work well with caches and deep memory...
Background: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs in nucleotide as well as amino acid sequences....
Michael Beckstette, Robert Homann, Robert Giegeric...