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» Evolutionary algorithms and dynamic programming
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SWAT
2004
Springer
78views Algorithms» more  SWAT 2004»
14 years 3 months ago
Online Maintenance of k-Medians and k-Covers on a Line
The standard dynamic programming solution to finding k-medians on a line with n nodes requires O(kn2 ) time. Dynamic programming speedup techniques, e.g., use of the quadrangle i...
Rudolf Fleischer, Mordecai J. Golin, Yan Zhang
CORR
2010
Springer
103views Education» more  CORR 2010»
13 years 9 months ago
Exploratory Analysis of Functional Data via Clustering and Optimal Segmentation
We propose in this paper an exploratory analysis algorithm for functional data. The method partitions a set of functions into K clusters and represents each cluster by a simple pr...
Georges Hébrail, Bernard Hugueney, Yves Lec...
JCB
2007
97views more  JCB 2007»
13 years 9 months ago
Parsing Nucleic Acid Pseudoknotted Secondary Structure: Algorithm and Applications
Accurate prediction of pseudoknotted nucleic acid secondary structure is an important computational challenge. Prediction algorithms based on dynamic programming aim to find a st...
Baharak Rastegari, Anne Condon
PPOPP
1999
ACM
14 years 2 months ago
Automatic Parallelization of Divide and Conquer Algorithms
Divide and conquer algorithms are a good match for modern parallel machines: they tend to have large amounts of inherent parallelism and they work well with caches and deep memory...
Radu Rugina, Martin C. Rinard
BMCBI
2006
129views more  BMCBI 2006»
13 years 9 months ago
Fast index based algorithms and software for matching position specific scoring matrices
Background: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs in nucleotide as well as amino acid sequences....
Michael Beckstette, Robert Homann, Robert Giegeric...