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CSB
2004
IEEE
152views Bioinformatics» more  CSB 2004»
14 years 1 months ago
EcMLST: An Online Database for Multi Locus Sequence Typing of Pathogenic Escherichia coli
In order to provide a portable and accurate typing system for the unambiguous characterization of pathogenic Escherichia coli isolates to the scientific community, we have constru...
Weihong Qi, David W. Lacher, Alyssa C. Bumbaugh, K...
IMECS
2007
13 years 11 months ago
Knowledge Acquisition from Computer Log Files by ADG with Variable Agent Size
Abstract—We had previously proposed an outstanding evolutionary method, Automatically Defined Groups (ADG), for generating heterogeneous cooperative agents, and then we had deve...
Akira Hara, Yoshiaki Kurosawa, Takumi Ichimura
BMCBI
2008
122views more  BMCBI 2008»
13 years 10 months ago
ESLpred2: improved method for predicting subcellular localization of eukaryotic proteins
Background: The expansion of raw protein sequence databases in the post genomic era and availability of fresh annotated sequences for major localizations particularly motivated us...
Aarti Garg, Gajendra P. S. Raghava
BMCBI
2008
126views more  BMCBI 2008»
13 years 10 months ago
c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
Background: Computational methods for characterizing novel transcription factor binding sites search for sequence patterns or "motifs" that appear repeatedly in genomic ...
Katerina Kechris, Hao Li
BMCBI
2006
120views more  BMCBI 2006»
13 years 9 months ago
Projections for fast protein structure retrieval
Background: In recent times, there has been an exponential rise in the number of protein structures in databases e.g. PDB. So, design of fast algorithms capable of querying such d...
Sourangshu Bhattacharya, Chiranjib Bhattacharyya, ...