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» Evolutionary search for low autocorrelated binary sequences
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BMCBI
2008
106views more  BMCBI 2008»
13 years 7 months ago
Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities
Background: Identification of RNA homologs within genomic stretches is difficult when pairwise sequence identity is low or unalignable flanking residues are present. In both cases...
Usman Roshan, Satish Chikkagoudar, Dennis R. Lives...
GECCO
2006
Springer
161views Optimization» more  GECCO 2006»
13 years 11 months ago
Instance similarity and the effectiveness of case injection in a genetic algorithm for binary quadratic programming
When an evolutionary algorithm addresses a sequence of instances of the same problem, it can seed its population with solutions that it found for previous instances. This techniqu...
Jason Amunrud, Bryant A. Julstrom
ICC
2008
IEEE
125views Communications» more  ICC 2008»
14 years 1 months ago
Cell Search for Cell-Based OFDM Systems Using Quasi Complete Complementary Codes
Abstract—Establishing a radio link in cell-based mobile communication systems involves searching and synchronizing the downlink known pattern of sequences associated with the bas...
Chao-Yu Chen, Ying-Ju Min, Kuei-Ying Lu, Chi-Chao ...
CSB
2005
IEEE
125views Bioinformatics» more  CSB 2005»
14 years 1 months ago
Peptide Charge State Determination for Low-Resolution Tandem Mass Spectra
Mass spectrometry is a particularly useful technology for the rapid and robust identification of peptides and proteins in complex mixtures. Peptide sequences can be identified b...
Aaron A. Klammer, Christine C. Wu, Michael J. MacC...
BMCBI
2008
139views more  BMCBI 2008»
13 years 7 months ago
A topological transformation in evolutionary tree search methods based on maximum likelihood combining p-ECR and neighbor joinin
Background: Inference of evolutionary trees using the maximum likelihood principle is NP-hard. Therefore, all practical methods rely on heuristics. The topological transformations...
Maozu Guo, Jian-Fu Li, Yang Liu