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» Evolving Consensus Sequence for Multiple Sequence Alignment ...
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CEC
2007
IEEE
14 years 2 months ago
An evolutionary progressive multiple sequence alignment
Abstract This paper presents a new evolutionary method, namely, a Two Phase evolutionary algorithm for multiple sequence alignments. This method is composed of different types of e...
Farhana Naznin, Morikazu Nakamura, Takeo Okazaki, ...
GECCO
2006
Springer
159views Optimization» more  GECCO 2006»
14 years 6 days ago
Identification of weak motifs in multiple biological sequences using genetic algorithm
Recognition of motifs in multiple unaligned sequences provides an insight into protein structure and function. The task of discovering these motifs is very challenging because mos...
Topon Kumar Paul, Hitoshi Iba
BMCBI
2006
137views more  BMCBI 2006»
13 years 8 months ago
Sigma: multiple alignment of weakly-conserved non-coding DNA sequence
Background: Existing tools for multiple-sequence alignment focus on aligning protein sequence or protein-coding DNA sequence, and are often based on extensions to Needleman-Wunsch...
Rahul Siddharthan
ICANNGA
2007
Springer
112views Algorithms» more  ICANNGA 2007»
14 years 2 months ago
Multiple Sequence Alignment with Evolutionary-Progressive Method
A new evolutionary-progressive method for Multiple Sequence Alignment problem is proposed. The method efficiently combines flexibility of evolutionary approach with speed and accu...
Pawel Kupis, Jacek Mandziuk
BMCBI
2010
106views more  BMCBI 2010»
13 years 8 months ago
Multiple structure alignment and consensus identification for proteins
Background: An algorithm is presented to compute a multiple structure alignment for a set of proteins and to generate a consensus (pseudo) protein which captures common substructu...
Ivaylo Ilinkin, Jieping Ye, Ravi Janardan