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BMCBI
2010
143views more  BMCBI 2010»
13 years 8 months ago
ETE: a python Environment for Tree Exploration
Background: Many bioinformatics analyses, ranging from gene clustering to phylogenetics, produce hierarchical trees as their main result. These are used to represent the relations...
Jaime Huerta-Cepas, Joaquín Dopazo, Toni Ga...
AEI
2006
108views more  AEI 2006»
13 years 8 months ago
Grammatical rules for specifying information for automated product data modeling
This paper presents a linguistic framework for developing a formal knowledge acquisition method. The framework is intended to empower domain experts to specify information require...
Ghang Lee, Charles M. Eastman, Rafael Sacks, Shamk...
JCB
2006
144views more  JCB 2006»
13 years 7 months ago
Modeling Virus Self-Assembly Pathways: Avoiding Dynamics Using Geometric Constraint Decomposition
We develop a model for elucidating the assembly pathways by which an icosahedral viral shell forms from 60 identical constituent protein monomers. This poorly understood process a...
Meera Sitharam, Mavis Agbandje-Mckenna
ASE
2005
140views more  ASE 2005»
13 years 7 months ago
Automated Procedure Construction for Deductive Synthesis
Deductive program synthesis systems based on automated theorem proving offer the promise of software that is correct by construction. However, the difficulty encountered in constru...
Steve Roach, Jeffrey Van Baalen
JCM
2007
131views more  JCM 2007»
13 years 7 months ago
Routing in Optical and Non-Optical Networks using Boolean Satisfiability
—Today, most routing problems are solved using Dijkstra’s shortest path algorithm. Many efficient implementations of Dijkstra’s algorithm exist and can handle large networks ...
Fadi A. Aloul, Bashar Al Rawi, Mokhtar Aboelaze