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» Exceptions for Algorithmic Skeletons
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APCCM
2006
13 years 10 months ago
Network data mining: methods and techniques for discovering deep linkage between attributes
Network Data Mining identifies emergent networks between myriads of individual data items and utilises special algorithms that aid visualisation of `emergent' patterns and tre...
John Galloway, Simeon J. Simoff
COMPGEOM
2009
ACM
14 years 3 months ago
Minimum cuts and shortest homologous cycles
We describe the first algorithms to compute minimum cuts in surface-embedded graphs in near-linear time. Given an undirected graph embedded on an orientable surface of genus g, w...
Erin W. Chambers, Jeff Erickson, Amir Nayyeri
SC
2003
ACM
14 years 2 months ago
A Million-Fold Speed Improvement in Genomic Repeats Detection
This paper presents a novel, parallel algorithm for generating top alignments. Top alignments are used for finding internal repeats in biological sequences like proteins and gene...
John W. Romein, Jaap Heringa, Henri E. Bal
ICPP
2005
IEEE
14 years 2 months ago
Filter Decomposition for Supporting Coarse-Grained Pipelined Parallelism
We consider the filter decomposition problem in supporting coarse-grained pipelined parallelism. This form of parallelism is suitable for data-driven applications in scenarios wh...
Wei Du, Gagan Agrawal
BMCBI
2006
155views more  BMCBI 2006»
13 years 8 months ago
CAVER: a new tool to explore routes from protein clefts, pockets and cavities
Background: The main aim of this study was to develop and implement an algorithm for the rapid, accurate and automated identification of paths leading from buried protein clefts, ...
Martin Petrek, Michal Otyepka, Pavel Banás,...