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IPPS
2010
IEEE
13 years 5 months ago
pFANGS: Parallel high speed sequence mapping for Next Generation 454-roche Sequencing reads
Millions of DNA sequences (reads) are generated by Next Generation Sequencing machines everyday. There is a need for high performance algorithms to map these sequences to the refer...
Sanchit Misra, Ramanathan Narayanan, Wei-keng Liao...
IWOMP
2007
Springer
14 years 1 months ago
Support for Fine Grained Dependent Tasks in OpenMP
OpenMP is widely used for shared memory parallel programming and is especially useful for the parallelisation of loops. When it comes to task parallelism, however, OpenMP is less p...
Oliver Sinnen, Jsun Pe, Alexander Vladimirovich Ko...
IPPS
2006
IEEE
14 years 1 months ago
Reducing the associativity and size of step caches in CRCW operation
Step caches are caches in which data entered to an cache array is kept valid only until the end of ongoing step of execution. Together with an advanced pipelined multithreaded arc...
M. Forsell
IPPS
2000
IEEE
14 years 1 days ago
A Mechanism for Speculative Memory Accesses Following Synchronizing Operations
In order to reduce the overhead of synchronizing operations of shared memory multiprocessors, this paper proposes a mechanism, named specMEM, to execute memory accesses following ...
Takayuki Sato, Kazuhiko Ohno, Hiroshi Nakashima
IPPS
2008
IEEE
14 years 2 months ago
SNAP, Small-world Network Analysis and Partitioning: An open-source parallel graph framework for the exploration of large-scale
We present SNAP (Small-world Network Analysis and Partitioning), an open-source graph framework for exploratory study and partitioning of large-scale networks. To illustrate the c...
David A. Bader, Kamesh Madduri