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GECCO
2003
Springer
14 years 26 days ago
The Structure of Evolutionary Exploration: On Crossover, Buildings Blocks, and Estimation-Of-Distribution Algorithms
Correlations between alleles after selection are an important source of information. Such correlations should be exploited for further search and thereby constitute the building bl...
Marc Toussaint
JCB
2007
83views more  JCB 2007»
13 years 7 months ago
Evolutionary Networks in the Formatted Protein Sequence Space
In our recent work, a new approach to establish sequence relatedness, by walking through the protein sequence space, was introduced. The sequence space is built from 20 amino acid...
Zakharia M. Frenkel, Edward N. Trifonov
ISMB
1997
13 years 9 months ago
Hierarchical Protein Structure Superposition Using Both Secondary Structure and Atomic Representations
The structural comparison of proteins has become increasingly important as a means to identify protein motifs and fold families. In this paper we present a new algorithm for the c...
Amit Pal Singh, Douglas L. Brutlag
BMCBI
2006
129views more  BMCBI 2006»
13 years 7 months ago
Improved alignment quality by combining evolutionary information, predicted secondary structure and self-organizing maps
Background: Protein sequence alignment is one of the basic tools in bioinformatics. Correct alignments are required for a range of tasks including the derivation of phylogenetic t...
Tomas Ohlson, Varun Aggarwal, Arne Elofsson, Rober...
BIBE
2004
IEEE
149views Bioinformatics» more  BIBE 2004»
13 years 11 months ago
Interactive 3D Protein Structure Visualization Using Virtual Reality
Large-scale biomedical data sets of macromolecular structures such as DNA and proteins describe highly complex biomolecular entities which often consist of thousands of atoms and ...
Elke Moritz, Jörg Meyer