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» External Memory Algorithms for String Problems
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ICNP
2006
IEEE
14 years 1 months ago
High Speed Pattern Matching for Network IDS/IPS
— The phenomenal growth of the Internet in the last decade and society’s increasing dependence on it has brought along, a flood of security attacks on the networking and compu...
Mansoor Alicherry, Muthusrinivasan Muthuprasanna, ...
BMCBI
2008
214views more  BMCBI 2008»
13 years 7 months ago
Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research
Background: This paper describes techniques for accelerating the performance of the string set matching problem with particular emphasis on applications in computational proteomic...
Yoginder S. Dandass, Shane C. Burgess, Mark Lawren...
ALGORITHMICA
2010
164views more  ALGORITHMICA 2010»
13 years 7 months ago
Space Efficient Algorithms for the Burrows-Wheeler Backtransformation
The Burrows-Wheeler transformation is used for effective data compression, e.g., in the well known program bzip2. Compression and decompression are done in a block-wise fashion; la...
Ulrich Lauther, Tamás Lukovszki
CEC
2009
IEEE
14 years 2 months ago
Evolutionary programming with ensemble of explicit memories for dynamic optimization
—This paper presents the evolutionary programming with an ensemble of memories to deal with optimization problems in dynamic environments. The proposed algorithm modifies a recen...
Ling Yu, Ponnuthurai N. Suganthan
SODA
2010
ACM
202views Algorithms» more  SODA 2010»
14 years 4 months ago
Counting Inversions, Offline Orthogonal Range Counting, and Related Problems
We give an O(n lg n)-time algorithm for counting the number of inversions in a permutation on n elements. This improves a long-standing previous bound of O(n lg n/ lg lg n) that ...
Timothy M. Chan, Mihai Patrascu