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SAC
2009
ACM
14 years 4 months ago
GTfold: a scalable multicore code for RNA secondary structure prediction
The prediction of the correct secondary structures of large RNAs is one of the unsolved challenges of computational molecular biology. Among the major obstacles is the fact that a...
Amrita Mathuriya, David A. Bader, Christine E. Hei...
WABI
2009
Springer
132views Bioinformatics» more  WABI 2009»
14 years 4 months ago
mpscan: Fast Localisation of Multiple Reads in Genomes
Abstract. With Next Generation Sequencers, sequence based transcriptomic or epigenomic assays yield millions of short sequence reads that need to be mapped back on a reference geno...
Eric Rivals, Leena Salmela, Petteri Kiiskinen, Pet...
CIKM
2009
Springer
14 years 4 months ago
Evaluating top-k queries over incomplete data streams
We study the problem of continuous monitoring of top-k queries over multiple non-synchronized streams. Assuming a sliding window model, this general problem has been a well addres...
Parisa Haghani, Sebastian Michel, Karl Aberer
ISAAC
2009
Springer
142views Algorithms» more  ISAAC 2009»
14 years 4 months ago
Of Choices, Failures and Asynchrony: The Many Faces of Set Agreement
Abstract. Set agreement is a fundamental problem in distributed computing in which processes collectively choose a small subset of values from a larger set of proposals. The imposs...
Dan Alistarh, Seth Gilbert, Rachid Guerraoui, Core...
CIKM
2007
Springer
14 years 4 months ago
Regularized locality preserving indexing via spectral regression
We consider the problem of document indexing and representation. Recently, Locality Preserving Indexing (LPI) was proposed for learning a compact document subspace. Different from...
Deng Cai, Xiaofei He, Wei Vivian Zhang, Jiawei Han