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BMCBI
2005
201views more  BMCBI 2005»
13 years 8 months ago
Principal component analysis for predicting transcription-factor binding motifs from array-derived data
Background: The responses to interleukin 1 (IL-1) in human chondrocytes constitute a complex regulatory mechanism, where multiple transcription factors interact combinatorially to...
Yunlong Liu, Matthew P. Vincenti, Hiroki Yokota
ISMIS
2005
Springer
14 years 2 months ago
Towards Ad-Hoc Rule Semantics for Gene Expression Data
The notion of rules is very popular and appears in different flavors, for example as association rules in data mining or as functional (or multivalued) dependencies in databases. ...
Marie Agier, Jean-Marc Petit, Einoshin Suzuki
SIGMOD
2005
ACM
161views Database» more  SIGMOD 2005»
14 years 9 months ago
Mining Top-k Covering Rule Groups for Gene Expression Data
In this paper, we propose a novel algorithm to discover the topk covering rule groups for each row of gene expression profiles. Several experiments on real bioinformatics datasets...
Gao Cong, Kian-Lee Tan, Anthony K. H. Tung, Xin Xu
BMCBI
2010
133views more  BMCBI 2010»
13 years 9 months ago
New components of the Dictyostelium PKA pathway revealed by Bayesian analysis of expression data
Background: Identifying candidate genes in genetic networks is important for understanding regulation and biological function. Large gene expression datasets contain relevant info...
Anup Parikh, Eryong Huang, Christopher Dinh, Blaz ...
BMCBI
2008
126views more  BMCBI 2008»
13 years 9 months ago
Relating gene expression data on two-component systems to functional annotations in Escherichia coli
Background: Obtaining physiological insights from microarray experiments requires computational techniques that relate gene expression data to functional information. Traditionall...
Anne M. Denton, Jianfei Wu, Megan K. Townsend, Pre...