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BMCBI
2006
106views more  BMCBI 2006»
13 years 10 months ago
Gene and protein nomenclature in public databases
Background: Frequently, several alternative names are in use for biological objects such as genes and proteins. Applications like manual literature search, automated text-mining, ...
Katrin Fundel, Ralf Zimmer
SAC
2010
ACM
14 years 5 months ago
Web-based graphical querying of databases through an ontology: the Wonder system
Biological scientists have made large amounts of data available on the Web, which can be accessed by canned or precomputed queries presented via web forms. To satisfy further info...
Diego Calvanese, C. Maria Keet, Werner Nutt, Maria...
BMCBI
2008
158views more  BMCBI 2008»
13 years 11 months ago
Discovering gene annotations in biomedical text databases
Currently, most of the discovered biological and biomedical knowledge is available as textual data in scientific papers. And, locating and curating information about a genomic enti...
Ali Cakmak, Gultekin Özsoyoglu
KDD
2008
ACM
138views Data Mining» more  KDD 2008»
14 years 11 months ago
A visual-analytic toolkit for dynamic interaction graphs
In this article we describe a visual-analytic tool for the interrogation of evolving interaction network data such as those found in social, bibliometric, WWW and biological appli...
Xintian Yang, Sitaram Asur, Srinivasan Parthasarat...
BMCBI
2010
202views more  BMCBI 2010»
13 years 11 months ago
NeMo: Network Module identification in Cytoscape
Background: As the size of the known human interactome grows, biologists increasingly rely on computational tools to identify patterns that represent protein complexes and pathway...
Corban G. Rivera, Rachit Vakil, Joel S. Bader