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JDA
2008
87views more  JDA 2008»
13 years 7 months ago
Lossless filter for multiple repetitions with Hamming distance
Similarity search in texts, notably in biological sequences, has received substantial attention in the last few years. Numerous filtration and indexing techniques have been create...
Pierre Peterlongo, Nadia Pisanti, Fréd&eacu...
AIRS
2004
Springer
14 years 26 days ago
On Bit-Parallel Processing of Multi-byte Text
There exist practical bit-parallel algorithms for several types of pair-wise string processing, such as longest common subsequence computation or approximate string matching. The b...
Heikki Hyyrö, Jun Takaba, Ayumi Shinohara, Ma...
VLDB
2002
ACM
184views Database» more  VLDB 2002»
14 years 7 months ago
Database indexing for large DNA and protein sequence collections
Our aim is to develop new database technologies for the approximate matching of unstructured string data using indexes. We explore the potential of the suffix tree data structure i...
Ela Hunt, Malcolm P. Atkinson, Robert W. Irving
CPM
2001
Springer
211views Combinatorics» more  CPM 2001»
13 years 12 months ago
Fuzzy Hamming Distance: A New Dissimilarity Measure
Lempel Ziv Coding (Extended Abstract). . . . . . . . . . . . . . . . . . . . . . . 18 Shmuel Tomi Klein, Yair Wiseman Approximate Matching of Run-Length Compressed Strings . . . . ...
Abraham Bookstein, Shmuel T. Klein, Timo Raita
APPROX
2011
Springer
284views Algorithms» more  APPROX 2011»
12 years 7 months ago
On Approximating the Number of Relevant Variables in a Function
In this work we consider the problem of approximating the number of relevant variables in a function given query access to the function. Since obtaining a multiplicative factor ap...
Dana Ron, Gilad Tsur