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BMCBI
2010
153views more  BMCBI 2010»
13 years 6 months ago
Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massi
Background: Massively parallel sequencing readouts of epigenomic assays are enabling integrative genome-wide analyses of genomic and epigenomic variation. Pash 3.0 performs sequen...
Cristian Coarfa, Fuli Yu, Christopher A. Miller, Z...
FAST
2010
13 years 9 months ago
Efficient Object Storage Journaling in a Distributed Parallel File System
Journaling is a widely used technique to increase file system robustness against metadata and/or data corruptions. While the overhead of journaling can be masked by the page cache...
Sarp Oral, Feiyi Wang, David Dillow, Galen M. Ship...
CAL
2007
13 years 7 months ago
Logic-Based Distributed Routing for NoCs
—The design of scalable and reliable interconnection networks for multicore chips (NoCs) introduces new design constraints like power consumption, area, and ultra low latencies. ...
José Flich, José Duato
RECOMB
2005
Springer
14 years 7 months ago
Information Theoretic Approaches to Whole Genome Phylogenies
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
David Burstein, Igor Ulitsky, Tamir Tuller, Benny ...
VLDB
2001
ACM
66views Database» more  VLDB 2001»
13 years 11 months ago
An Evaluation of Generic Bulk Loading Techniques
Bulk loading refers to the process of creating an index from scratch for a given data set. This problem is well understood for B-trees, but so far, non-traditional index structure...
Jochen Van den Bercken, Bernhard Seeger