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WABI
2009
Springer
132views Bioinformatics» more  WABI 2009»
14 years 2 months ago
mpscan: Fast Localisation of Multiple Reads in Genomes
Abstract. With Next Generation Sequencers, sequence based transcriptomic or epigenomic assays yield millions of short sequence reads that need to be mapped back on a reference geno...
Eric Rivals, Leena Salmela, Petteri Kiiskinen, Pet...
ICDM
2006
IEEE
134views Data Mining» more  ICDM 2006»
14 years 1 months ago
Fast Frequent Free Tree Mining in Graph Databases
Free tree, as a special graph which is connected, undirected and acyclic, is extensively used in domains such as computational biology, pattern recognition, computer networks, XML...
Peixiang Zhao, Jeffrey Xu Yu
BIBM
2008
IEEE
112views Bioinformatics» more  BIBM 2008»
14 years 2 months ago
Fast Alignments of Metabolic Networks
Network alignments are extensively used for comparing, exploring, and predicting biological networks. Existing alignment tools are mostly based on isomorphic and homeomorphic embe...
Qiong Cheng, Piotr Berman, Robert W. Harrison, Ale...
CIKM
2008
Springer
13 years 9 months ago
On effective presentation of graph patterns: a structural representative approach
In the past, quite a few fast algorithms have been developed to mine frequent patterns over graph data, with the large spectrum covering many variants of the problem. However, the...
Chen Chen, Cindy Xide Lin, Xifeng Yan, Jiawei Han
ICML
2003
IEEE
14 years 8 months ago
Finding Underlying Connections: A Fast Graph-Based Method for Link Analysis and Collaboration Queries
Many techniques in the social sciences and graph theory deal with the problem of examining and analyzing patterns found in the underlying structure and associations of a group of ...
Jeremy Kubica, Andrew W. Moore, David Cohn, Jeff G...