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DIS
2006
Springer
14 years 7 days ago
A New Family of String Classifiers Based on Local Relatedness
This paper introduces a new family of string classifiers based on local relatedness. We use three types of local relatedness measurements, namely, longest common substrings (LCStr&...
Yasuto Higa, Shunsuke Inenaga, Hideo Bannai, Masay...
IPL
2008
93views more  IPL 2008»
13 years 8 months ago
Computing Longest Previous Factor in linear time and applications
We give two optimal linear-time algorithms for computing the Longest Previous Factor (LPF) array corresponding to a string w. For any position i in w, LPF[i] gives the length of th...
Maxime Crochemore, Lucian Ilie
IPPS
2006
IEEE
14 years 2 months ago
Implementation of a programmable array processor architecture for approximate string matching algorithms on FPGAs
Approximate string matching problem is a common and often repeated task in information retrieval and bioinformatics. This paper proposes a generic design of a programmable array p...
Panagiotis D. Michailidis, Konstantinos G. Margari...
ICML
2006
IEEE
14 years 9 months ago
Fast and space efficient string kernels using suffix arrays
String kernels which compare the set of all common substrings between two given strings have recently been proposed by Vishwanathan & Smola (2004). Surprisingly, these kernels...
Choon Hui Teo, S. V. N. Vishwanathan
ICALP
2005
Springer
14 years 2 months ago
Randomized Fast Design of Short DNA Words
We consider the problem of efficiently designing sets (codes) of equal-length DNA strings (words) that satisfy certain combinatorial constraints. This problem has numerous motivati...
Ming-Yang Kao, Manan Sanghi, Robert T. Schweller