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WEA
2004
Springer
150views Algorithms» more  WEA 2004»
14 years 3 months ago
Increased Bit-Parallelism for Approximate String Matching
Abstract. Bit-parallelism permits executing several operations simultaneously over a set of bits or numbers stored in a single computer word. This technique permits searching for t...
Heikki Hyyrö, Kimmo Fredriksson, Gonzalo Nava...
CPM
1998
Springer
209views Combinatorics» more  CPM 1998»
14 years 2 months ago
A Fast Bit-Vector Algorithm for Approximate String Matching Based on Dynamic Programming
The approximate string matching problem is to find all locations at which a query of length m matches a substring of a text of length n with k-or-fewer differences. Simple and prac...
Gene Myers
ICALP
2005
Springer
14 years 3 months ago
Randomized Fast Design of Short DNA Words
We consider the problem of efficiently designing sets (codes) of equal-length DNA strings (words) that satisfy certain combinatorial constraints. This problem has numerous motivati...
Ming-Yang Kao, Manan Sanghi, Robert T. Schweller
CPM
2010
Springer
175views Combinatorics» more  CPM 2010»
14 years 2 months ago
Compression, Indexing, and Retrieval for Massive String Data
The field of compressed data structures seeks to achieve fast search time, but using a compressed representation, ideally requiring less space than that occupied by the original i...
Wing-Kai Hon, Rahul Shah, Jeffrey Scott Vitter
SIGIR
1998
ACM
14 years 2 months ago
Fast Searching on Compressed Text Allowing Errors
Abstract We present a fast compression and decompression scheme for natural language texts that allows e cient and exible string matching by searching the compressed text directly....
Edleno Silva de Moura, Gonzalo Navarro, Nivio Zivi...