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CSB
2004
IEEE
177views Bioinformatics» more  CSB 2004»
14 years 9 days ago
Compressed Pattern Matching in DNA Sequences
We propose derivative Boyer-Moore (d-BM), a new compressed pattern matching algorithm in DNA sequences. This algorithm is based on the BoyerMoore method, which is one of the most ...
Lei Chen, Shiyong Lu, Jeffrey L. Ram
CEC
2007
IEEE
14 years 2 months ago
Memetic algorithms for inexact graph matching
—The noise-robust matching of two graphs is a hard combinatorial problem with practical importance in several domains. In practical applications, a unique solution for a given in...
Thomas Bärecke, Marcin Detyniecki
BALT
2006
14 years 9 days ago
Introducing Softness into Inductive Queries on String Databases
In many application domains (e.g., WWW mining, molecular biology), large string datasets are available and yet under-exploited. The inductive database framework assumes that both s...
Ieva Mitasiunaite, Jean-François Boulicaut
CSB
2005
IEEE
132views Bioinformatics» more  CSB 2005»
13 years 10 months ago
A Fast Shotgun Assembly Heuristic
Genome sequencing opened a new era in genetics allowing the study of genomes at the nucleotide level. However, the chosen method of sequencing produced large numbers of nucleotide...
Christopher Wilks, Sami Khuri
EOR
2007
97views more  EOR 2007»
13 years 8 months ago
Using pattern matching for tiling and packing problems
act 12 This paper describes a new placement method based on pattern matching for 2D tiling problems. Tiling problem can be 13 considered as a special case of bin packing. In the pr...
Mahmood Amintoosi, Hadi Sadoghi Yazdi, Mahmood Fat...