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AAAI
2010
13 years 11 months ago
Fast Algorithms for Top-k Approximate String Matching
Top-k approximate querying on string collections is an important data analysis tool for many applications, and it has been exhaustively studied. However, the scale of the problem ...
Zhenglu Yang, Jianjun Yu, Masaru Kitsuregawa
CPM
1998
Springer
209views Combinatorics» more  CPM 1998»
14 years 2 months ago
A Fast Bit-Vector Algorithm for Approximate String Matching Based on Dynamic Programming
The approximate string matching problem is to find all locations at which a query of length m matches a substring of a text of length n with k-or-fewer differences. Simple and prac...
Gene Myers
CPM
2009
Springer
207views Combinatorics» more  CPM 2009»
14 years 1 months ago
An Efficient Matching Algorithm for Encoded DNA Sequences and Binary Strings
We present a new efficient algorithm for exact matching in encoded DNA sequences and on binary strings. Our algorithm combines a multi-pattern version of the Bndm algorithm and a s...
Simone Faro, Thierry Lecroq
SOFSEM
2010
Springer
14 years 6 months ago
Fast Arc-Annotated Subsequence Matching in Linear Space
An arc-annotated string is a string of characters, called bases, augmented with a set of pairs, called arcs, each connecting two bases. Given arc-annotated strings P and Q the arc-...
Philip Bille, Inge Li Gørtz