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» Fast structural similarity index algorithm
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BMCBI
2008
103views more  BMCBI 2008»
13 years 7 months ago
TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model
Background: Protein structure analysis and comparison are major challenges in structural bioinformatics. Despite the existence of many tools and algorithms, very few of them have ...
Mallika Veeramalai, Yuzhen Ye, Adam Godzik
ICDE
2004
IEEE
105views Database» more  ICDE 2004»
14 years 9 months ago
SPINE: Putting Backbone into String Indexing
The indexing technique commonly used for long strings, such as genomes, is the suffix tree, which is based on a vertical (intra-path) compaction of the underlying trie structure. ...
Naresh Neelapala, Romil Mittal, Jayant R. Haritsa
TKDE
1998
102views more  TKDE 1998»
13 years 7 months ago
Fast and Effective Retrieval of Medical Tumor Shapes
—We investigate the problem of retrieving similar shapes from a large database; in particular, we focus on medical tumor shapes (“Find tumors that are similar to a given patter...
Flip Korn, Nikolaos Sidiropoulos, Christos Falouts...
SIGMOD
2001
ACM
184views Database» more  SIGMOD 2001»
14 years 7 months ago
Locally Adaptive Dimensionality Reduction for Indexing Large Time Series Databases
Similarity search in large time series databases has attracted much research interest recently. It is a difficult problem because of the typically high dimensionality of the data....
Eamonn J. Keogh, Kaushik Chakrabarti, Sharad Mehro...
CIKM
2005
Springer
13 years 9 months ago
Handling frequent updates of moving objects
A critical issue in moving object databases is to develop appropriate indexing structures for continuously moving object locations so that queries can still be performed efficien...
Bin Lin, Jianwen Su