54 search results - page 5 / 11 » FastPCMSA: An Improved Parallel Algorithm for the Constraine... |
CIKM
2009
Springer
14 years 2 months ago
2009
Springer
Background: Although both conservation and correlated mutation (CM) are important information reflecting the different sorts of context in multiple sequence alignment, most of ali...
BMCBI
2011
12 years 11 months ago
2011
Background: Rapid annotation and comparisons of genomes from multiple isolates (pan-genomes) is becoming commonplace due to advances in sequencing technology. Genome annotations c...
BIBE
2007
IEEE
14 years 2 months ago
2007
IEEE
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
IPPS
2008
IEEE
14 years 2 months ago
2008
IEEE
One of the most commonly used tools by computational biologists is some form of sequence alignment. Heuristic alignment algorithms developed for speed and their multiple results s...
BMCBI
2008
13 years 7 months ago
2008
Background: We propose a multiple sequence alignment (MSA) algorithm and compare the alignment-quality and execution-time of the proposed algorithm with that of existing algorithm...