Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
An algorithm is proposed for the purpose of optimizing the availability of files to an operating system prior to their being required during execution by a running system. This al...
There are many local and greedy algorithms for energy minimization over Markov Random Field (MRF) such as iterated condition mode (ICM) and various gradient descent methods. Local ...
Background: Owing to the rapid expansion of RNA structure databases in recent years, efficient methods for structure comparison are in demand for function prediction and evolution...
The main goal of the motif finding problem is to detect novel, over-represented unknown signals in a set of sequences (e.g. transcription factor binding sites in a genome). The mo...
Chandan K. Reddy, Yao-Chung Weng, Hsiao-Dong Chian...