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BMCBI
2010
189views more  BMCBI 2010»
13 years 7 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
ACMSE
2009
ACM
14 years 1 months ago
FI-based file access predictor
An algorithm is proposed for the purpose of optimizing the availability of files to an operating system prior to their being required during execution by a running system. This al...
Jinsuk Baek, Paul S. Fisher, Mingyung Kwak
ECCV
2008
Springer
14 years 5 months ago
Toward Global Minimum through Combined Local Minima
There are many local and greedy algorithms for energy minimization over Markov Random Field (MRF) such as iterated condition mode (ICM) and various gradient descent methods. Local ...
Ho Yub Jung, Kyoung Mu Lee, Sang Uk Lee
BMCBI
2006
161views more  BMCBI 2006»
13 years 7 months ago
A method for rapid similarity analysis of RNA secondary structures
Background: Owing to the rapid expansion of RNA structure databases in recent years, efficient methods for structure comparison are in demand for function prediction and evolution...
Na Liu, Tianming Wang
ALMOB
2006
155views more  ALMOB 2006»
13 years 7 months ago
Refining motifs by improving information content scores using neighborhood profile search
The main goal of the motif finding problem is to detect novel, over-represented unknown signals in a set of sequences (e.g. transcription factor binding sites in a genome). The mo...
Chandan K. Reddy, Yao-Chung Weng, Hsiao-Dong Chian...