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BMCBI
2005
152views more  BMCBI 2005»
13 years 8 months ago
Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER
Background: Profile hidden Markov model (HMM) techniques are among the most powerful methods for protein homology detection. Yet, the critical features for successful modelling ar...
Markus Wistrand, Erik L. L. Sonnhammer
APLAS
2006
ACM
14 years 2 months ago
Scheme with Classes, Mixins, and Traits
Abstract. The Scheme language report advocates language design as the composition of a small set of orthogonal constructs, instead of a large accumulation of features. In this pape...
Matthew Flatt, Robert Bruce Findler, Matthias Fell...
GECCO
2008
Springer
133views Optimization» more  GECCO 2008»
13 years 10 months ago
Using feature-based fitness evaluation in symbolic regression with added noise
Symbolic regression is a popular genetic programming (GP) application. Typically, the fitness function for this task is based on a sum-of-errors, involving the values of the depe...
Janine H. Imada, Brian J. Ross
FCT
2005
Springer
14 years 2 months ago
On the Incompressibility of Monotone DNFs
We prove optimal lower bounds for multilinear circuits and for monotone circuits with bounded depth. These lower bounds state that, in order to compute certain functions, these cir...
Matthias P. Krieger
IPPS
1999
IEEE
14 years 1 months ago
PM-PVM: A Portable Multithreaded PVM
PM-PVM is a portable implementation of PVM designed to work on SMP architectures supporting multithreading. PM-PVM portability is achieved through the implementation of the PVM fu...
Claudio M. P. Santos, Júlio S. Aude