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BMCBI
2005
127views more  BMCBI 2005»
13 years 10 months ago
Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns"
Background: The genomes of prokaryotes and lower eukaryotes display a very strong 11 bp periodic bias in the distribution of their nucleotides. This bias is present throughout a g...
Etienne Larsabal, Antoine Danchin
BMCBI
2005
108views more  BMCBI 2005»
13 years 10 months ago
Storing, linking, and mining microarray databases using SRS
Background: SRS (Sequence Retrieval System) has proven to be a valuable platform for storing, linking, and querying biological databases. Due to the availability of a broad range ...
Antoine Veldhoven, Don de Lange, Marcel Smid, Vict...
CGA
2005
13 years 10 months ago
Designing a Visualization Framework for Multidimensional Data
visualization to abstract data sets like network intrusion detection, recommender systems, and database query results. Although display algorithms are a critical component in the v...
Brent M. Dennis, Sarat Kocherlakota, Amit P. Sawan...
BMCBI
2004
150views more  BMCBI 2004»
13 years 10 months ago
Graph-based iterative Group Analysis enhances microarray interpretation
Background: One of the most time-consuming tasks after performing a gene expression experiment is the biological interpretation of the results by identifying physiologically impor...
Rainer Breitling, Anna Amtmann, Pawel Herzyk
BMCBI
2004
177views more  BMCBI 2004»
13 years 10 months ago
Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model
Background: Certain protein families are highly conserved across distantly related organisms and belong to large and functionally diverse superfamilies. The patterns of conservati...
Andrew F. Neuwald, Jun S. Liu
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