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» Filling the gap between biology and computer science
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ESCIENCE
2006
IEEE
13 years 11 months ago
Grid Services Toolkit for Process Data Processing
Grid is a rapidly growing new technology that will provide easy access to huge amounts of computer resources, both hardware and software. As these resources become available soon,...
Tim O. Müller, Thomas Jejkal, Rainer Stotzka,...
FOCS
2003
IEEE
14 years 23 days ago
On Certain Connectivity Properties of the Internet Topology
We show that random graphs in the preferential connectivity model have constant conductance, and hence have worst-case routing congestion that scales logarithmically with the numb...
Milena Mihail, Christos H. Papadimitriou, Amin Sab...
RECOMB
2001
Springer
13 years 12 months ago
Edit distance between two RNA structures
The primary structure of a ribonucleic acid (RNA) molecule is a sequence of nucleotides (bases) over the four-letter alphabet fA; C; G; Ug. The secondary or tertiary structure of ...
Guohui Lin, Bin Ma, Kaizhong Zhang
TC
2010
13 years 5 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
BICOB
2009
Springer
14 years 2 months ago
A Bayesian Approach to High-Throughput Biological Model Generation
Abstract. With the availability of hundreds and soon-to-be thousands of complete genomes, the construction of genome-scale metabolic models for these organisms has attracted much a...
Xinghua Shi, Rick L. Stevens