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TCBB
2010
136views more  TCBB 2010»
13 years 5 months ago
Efficient Extraction of Protein-Protein Interactions from Full-Text Articles
—Proteins and their interactions govern virtually all cellular processes, such as regulation, signaling, metabolism, and structure. Most experimental findings pertaining to such ...
Jörg Hakenberg, Robert Leaman, Nguyen Ha Vo, ...
PODS
2008
ACM
165views Database» more  PODS 2008»
14 years 6 months ago
Data exchange and schema mappings in open and closed worlds
In the study of data exchange one usually assumes an openworld semantics, making it possible to extend instances of target schemas. An alternative closed-world semantics only move...
Leonid Libkin, Cristina Sirangelo
ALMOB
2006
80views more  ALMOB 2006»
13 years 6 months ago
Pattern statistics on Markov chains and sensitivity to parameter estimation
Background: In order to compute pattern statistics in computational biology a Markov model is commonly used to take into account the sequence composition. Usually its parameter mu...
Grégory Nuel
BMCBI
2006
133views more  BMCBI 2006»
13 years 6 months ago
Choosing negative examples for the prediction of protein-protein interactions
The protein-protein interaction networks of even well-studied model organisms are sketchy at best, highlighting the continued need for computational methods to help direct experim...
Asa Ben-Hur, William Stafford Noble
BMCBI
2004
166views more  BMCBI 2004»
13 years 6 months ago
Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models
Background: Many current gene prediction methods use only one model to represent proteincoding regions in a genome, and so are less likely to predict the location of genes that ha...
Shaun Mahony, James O. McInerney, Terry J. Smith, ...