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BMCBI
2005
89views more  BMCBI 2005»
13 years 9 months ago
An empirical analysis of training protocols for probabilistic gene finders
Background: Generalized hidden Markov models (GHMMs) appear to be approaching acceptance as a de facto standard for state-of-the-art ab initio gene finding, as evidenced by the re...
William H. Majoros, Steven Salzberg
BMCBI
2005
77views more  BMCBI 2005»
13 years 9 months ago
Combining Affymetrix microarray results
Background: As the use of microarray technology becomes more prevalent it is not unusual to find several laboratories employing the same microarray technology to identify genes re...
John R. Stevens, R. W. Doerge
BMCBI
2005
125views more  BMCBI 2005»
13 years 9 months ago
Query3d: a new method for high-throughput analysis of functional residues in protein structures
Background: The identification of local similarities between two protein structures can provide clues of a common function. Many different methods exist for searching for similar ...
Gabriele Ausiello, Allegra Via, Manuela Helmer-Cit...
VLSISP
2008
104views more  VLSISP 2008»
13 years 9 months ago
Guidance of Loop Ordering for Reduced Memory Usage in Signal Processing Applications
Data dominated signal processing applications are typically described using large and multi-dimensional arrays and loop nests. The order of production and consumption of array ele...
Per Gunnar Kjeldsberg, Francky Catthoor, Sven Verd...
WWW
2008
ACM
13 years 9 months ago
Discovering co-located queries in geographic search logs
A geographic search request contains a query consisting of one or more keywords, and a search-location that the user searches for. In this paper, we study the problem of discoveri...
Xiangye Xiao, Longhao Wang, Xing Xie, Qiong Luo