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» Finding Dynamic Modules of Biological Regulatory Networks
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HYBRID
2001
Springer
14 years 1 months ago
Hybrid Modeling and Simulation of Biomolecular Networks
Abstract. In a biological cell, cellular functions and the genetic regulatory apparatus are implemented and controlled by a network of chemical reactions in which regulatory protei...
Rajeev Alur, Calin Belta, Franjo Ivancic
SAT
2009
Springer
95views Hardware» more  SAT 2009»
14 years 3 months ago
Finding Lean Induced Cycles in Binary Hypercubes
Induced (chord-free) cycles in binary hypercubes have many applications in computer science. The state of the art for computing such cycles relies on genetic algorithms, which are,...
Yury Chebiryak, Thomas Wahl, Daniel Kroening, Leop...
BMCBI
2010
144views more  BMCBI 2010»
13 years 8 months ago
Finding sRNA generative locales from high-throughput sequencing data with NiBLS
Background: Next-generation sequencing technologies allow researchers to obtain millions of sequence reads in a single experiment. One important use of the technology is the seque...
Daniel MacLean, Vincent Moulton, David J. Studholm...
GI
2009
Springer
14 years 1 months ago
Massively-Parallel Simulation of Biochemical Systems
: Understanding biological evolution prompts for a detailed understanding of the realized phenotype. Biochemical and gene regulatory dynamics are a cornerstone for the physiology o...
Jens Ackermann, Paul Baecher, Thorsten Franzel, Mi...
AB
2008
Springer
14 years 2 months ago
Local Structure and Behavior of Boolean Bioregulatory Networks
Abstract. A well-known discrete approach to modeling biological regulatory networks is the logical framework developed by R. Thomas. The network structure is captured in an interac...
Heike Siebert