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» Finding Groups in Data: Cluster Analysis with Ants
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ISMB
2000
13 years 8 months ago
Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data
We have developed a set of methods and tools for automatic discovery of putative regulatory signals in genome sequences. The analysis pipeline consists of gene expression data clu...
Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Ro...
BMCBI
2011
13 years 1 months ago
A novel approach to the clustering of microarray data via nonparametric density estimation
Background: Cluster analysis is a crucial tool in several biological and medical studies dealing with microarray data. Such studies pose challenging statistical problems due to di...
Riccardo De Bin, Davide Risso
CSDA
2007
264views more  CSDA 2007»
13 years 6 months ago
Model-based methods to identify multiple cluster structures in a data set
Model-based clustering exploits finite mixture models for detecting group in a data set. It provides a sound statistical framework which can address some important issues, such as...
Giuliano Galimberti, Gabriele Soffritti
BMCBI
2005
89views more  BMCBI 2005»
13 years 6 months ago
Theme discovery from gene lists for identification and viewing of multiple functional groups
Background: High throughput methods of the genome era produce vast amounts of data in the form of gene lists. These lists are large and difficult to interpret without advanced com...
Petri Pehkonen, Garry Wong, Petri Töröne...
BMCBI
2010
144views more  BMCBI 2010»
13 years 6 months ago
Finding sRNA generative locales from high-throughput sequencing data with NiBLS
Background: Next-generation sequencing technologies allow researchers to obtain millions of sequence reads in a single experiment. One important use of the technology is the seque...
Daniel MacLean, Vincent Moulton, David J. Studholm...