Background: Multiple genome alignment is an important problem in bioinformatics. An important subproblem used by many multiple alignment approaches is that of aligning two multipl...
For every string inclusion relation there are two optimization problems: find a longest string included in every string of a given finite language, and find a shortest string in...
Structural join operations are central to evaluating queries against XML data, and are typically responsible for consuming a lion's share of the query processing time. Thus, ...
Abstract. So far, resting state functional connectivity (RSFC) has been performed mainly by seed correlation analysis (SCA) on functional MRI (fMRI) studies. In previous studies, t...
The problem of discovering novel motifs of binding sites is important to the understanding of gene regulatory networks. Motifs are generally represented by matrices (PWM or PSSM) o...