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» Finding Optimal Pairs of Patterns
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BMCBI
2005
134views more  BMCBI 2005»
13 years 8 months ago
Ancestral sequence alignment under optimal conditions
Background: Multiple genome alignment is an important problem in bioinformatics. An important subproblem used by many multiple alignment approaches is that of aligning two multipl...
Alexander K. Hudek, Daniel G. Brown 0001
SIAMDM
1998
89views more  SIAMDM 1998»
13 years 8 months ago
String Noninclusion Optimization Problems
For every string inclusion relation there are two optimization problems: find a longest string included in every string of a given finite language, and find a shortest string in...
Anatoly R. Rubinov, Vadim G. Timkovsky
ICDE
2003
IEEE
161views Database» more  ICDE 2003»
14 years 9 months ago
Structural Join Order Selection for XML Query Optimization
Structural join operations are central to evaluating queries against XML data, and are typically responsible for consuming a lion's share of the query processing time. Thus, ...
Yuqing Wu, Jignesh M. Patel, H. V. Jagadish
MICCAI
2004
Springer
14 years 1 months ago
Detecting Functional Connectivity of the Cerebellum Using Low Frequency Fluctuations (LFFs)
Abstract. So far, resting state functional connectivity (RSFC) has been performed mainly by seed correlation analysis (SCA) on functional MRI (fMRI) studies. In previous studies, t...
Yong He, Yufeng Zang, Tianzi Jiang, Meng Liang, Ga...
TCBB
2008
103views more  TCBB 2008»
13 years 8 months ago
DNA Motif Representation with Nucleotide Dependency
The problem of discovering novel motifs of binding sites is important to the understanding of gene regulatory networks. Motifs are generally represented by matrices (PWM or PSSM) o...
Francis Y. L. Chin, Henry C. M. Leung