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BMCBI
2011
12 years 11 months ago
Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities
Background: Gene regulatory networks play essential roles in living organisms to control growth, keep internal metabolism running and respond to external environmental changes. Un...
Yao Fu, Laura R. Jarboe, Julie A. Dickerson
ALMOB
2006
155views more  ALMOB 2006»
13 years 7 months ago
A phylogenetic generalized hidden Markov model for predicting alternatively spliced exons
Background: An important challenge in eukaryotic gene prediction is accurate identification of alternatively spliced exons. Functional transcripts can go undetected in gene expres...
Jonathan E. Allen, Steven L. Salzberg
BMCBI
2011
12 years 11 months ago
Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence
Background: Alternative splicing of pre-mature RNA is an important process eukaryotes utilize to increase their repertoire of different protein products. Several types of differen...
Holger Pillmann, Klas Hatje, Florian Odronitz, Bjo...
GRID
2006
Springer
13 years 7 months ago
Measuring the Performance and Reliability of Production Computational Grids
In this work we report on data gathered via a deployment of a monitoring and benchmarking infrastructure on two production grid platforms, TeraGrid and Geon. Our result show that t...
Omid Khalili, Jiahua He, Catherine Olschanowsky, A...
CSL
2004
Springer
13 years 7 months ago
Lexical knowledge and human disagreement on a WSD task
This paper explores factors correlating with lack of inter-annotator agreement on a word sense disambiguation (WSD) task taken from SENSEVAL-2. Twenty-seven subjects were given a ...
G. Craig Murray, Rebecca Green