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» Finding Similar Regions in Many Sequences
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BMCBI
2011
12 years 11 months ago
Detection of Lineage-Specific Evolutionary Changes among Primate Species
Background: Comparison of the human genome with other primates offers the opportunity to detect evolutionary events that created the diverse phenotypes among the primate species. ...
Mihaela Pertea, Geo Pertea, Steven L. Salzberg
DEXA
2010
Springer
187views Database» more  DEXA 2010»
13 years 5 months ago
Pivot Selection Method for Optimizing both Pruning and Balancing in Metric Space Indexes
We researched to try to find a way to reduce the cost of nearest neighbor searches in metric spaces. Many similarity search indexes recursively divide a region into subregions by u...
Hisashi Kurasawa, Daiji Fukagawa, Atsuhiro Takasu,...
VLDB
2007
ACM
121views Database» more  VLDB 2007»
14 years 7 months ago
Ranked Subsequence Matching in Time-Series Databases
Existing work on similar sequence matching has focused on either whole matching or range subsequence matching. In this paper, we present novel methods for ranked subsequence match...
Wook-Shin Han, Jinsoo Lee, Yang-Sae Moon, Haifeng ...
BIB
2006
172views more  BIB 2006»
13 years 7 months ago
Advances in the Exon-Intron Database (EID)
Investigation of exon^intron gene structures is a non-trivial task due to enormous expansions of the eukaryotic genomes, great variety of gene forms, and the imperfectness in sequ...
Valery Shepelev, Alexei Fedorov
BMCBI
2006
111views more  BMCBI 2006»
13 years 7 months ago
Development of an unbiased statistical method for the analysis of unigenic evolution
Background: Unigenic evolution is a powerful genetic strategy involving random mutagenesis of a single gene product to delineate functionally important domains of a protein. This ...
Colleen D. Behrsin, Chris J. Brandl, David W. Litc...