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» Finding Transport Proteins in a General Protein Database
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NAR
2000
118views more  NAR 2000»
13 years 7 months ago
The EcoCyc and MetaCyc databases
EcoCyc is an organism-specific Pathway/Genome Database that describes the metabolic and signaltransduction pathways of Escherichia coli, its enzymes, and--a new addition--its tran...
Peter D. Karp, Monica Riley, Milton H. Saier Jr., ...
DASFAA
2005
IEEE
209views Database» more  DASFAA 2005»
14 years 1 months ago
PADS: Protein Structure Alignment Using Directional Shape Signatures
A novel approach for similarity search on the protein structure databases is proposed. PADS (Protein Alignment by Directional shape Signatures) incorporates the three dimensional ...
S. Alireza Aghili, Divyakant Agrawal, Amr El Abbad...
PRIB
2009
Springer
187views Bioinformatics» more  PRIB 2009»
14 years 3 days ago
Semi-supervised Prediction of Protein Interaction Sentences Exploiting Semantically Encoded Metrics
Protein-protein interaction (PPI) identification is an integral component of many biomedical research and database curation tools. Automation of this task through classification ...
Tamara Polajnar, Mark A. Girolami
IMSCCS
2006
IEEE
14 years 1 months ago
Identification of New Members of Hydrophobin Family Using Primary Structure Analysis
Background: Hydrophobins are fungal proteins that can turn into amphipathic membranes at hydrophilic/hydrophobic interfaces by self-assembly. The assemblages by Class I hydrophobi...
Kuan Yang, Youping Deng, Chaoyang Zhang, Mohamed O...
PSB
2001
13 years 9 months ago
PIES, A Protein Interaction Extraction System
We consider the problem of extracting, manipulating, and managing biological pathways, especially protein-protein interaction pathways. We discuss here the Protein Interaction Ext...
Limsoon Wong