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GCB
2004
Springer
223views Biometrics» more  GCB 2004»
13 years 11 months ago
PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays
: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs. In this paper, we present a new nonheuristic algorithm, ...
Michael Beckstette, Dirk Strothmann, Robert Homann...
CORR
2010
Springer
157views Education» more  CORR 2010»
13 years 7 months ago
Efficient Clustering with Limited Distance Information
Given a point set S and an unknown metric d on S, we study the problem of efficiently partitioning S into k clusters while querying few distances between the points. In our model ...
Konstantin Voevodski, Maria-Florina Balcan, Heiko ...
NAR
2008
142views more  NAR 2008»
13 years 7 months ago
CMGSDB: integrating heterogeneous Caenorhabditis elegans data sources using compositional data mining
CMGSDB (Database for Computational Modeling of Gene Silencing) is an integration of heterogeneous data sources about Caenorhabditis elegans with capabilities for compositional dat...
Amrita Pati, Ying Jin, Karsten Klage, Richard F. H...
NAR
2007
131views more  NAR 2007»
13 years 7 months ago
Snap: an integrated SNP annotation platform
Snap (Single Nucleotide Polymorphism Annotation Platform) is a server designed to comprehensively analyze single genes and relationships between genes basing on SNPs in the human ...
Shengting Li, Lijia Ma, Heng Li, Søren Vang...
KDD
2005
ACM
104views Data Mining» more  KDD 2005»
14 years 7 months ago
Mining tree queries in a graph
We present an algorithm for mining tree-shaped patterns in a large graph. Novel about our class of patterns is that they can contain constants, and can contain existential nodes w...
Bart Goethals, Eveline Hoekx, Jan Van den Bussche