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» Finding Transport Proteins in a General Protein Database
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NAR
2000
76views more  NAR 2000»
13 years 7 months ago
InBase, the Intein Database
InBase, the Intein Database (http://www.neb.com/neb/ inteins.html ), is a comprehensive on-line resource that includes the Intein Registry. Inteins are protein splicing elements t...
Francine B. Perler
BMCBI
2010
80views more  BMCBI 2010»
13 years 7 months ago
Sampling the conformation of protein surface residues for flexible protein docking
Background: The problem of determining the physical conformation of a protein dimer, given the structures of the two interacting proteins in their unbound state, is a difficult on...
Patricia Francis-Lyon, Shengyin Gu, Joel Hass, Nin...
BMCBI
2006
106views more  BMCBI 2006»
13 years 7 months ago
Gene and protein nomenclature in public databases
Background: Frequently, several alternative names are in use for biological objects such as genes and proteins. Applications like manual literature search, automated text-mining, ...
Katrin Fundel, Ralf Zimmer
ADC
2006
Springer
158views Database» more  ADC 2006»
14 years 1 months ago
Dimensionality reduction in patch-signature based protein structure matching
Searching bio-chemical structures is becoming an important application domain of information retrieval. This paper introduces a protein structure matching problem and formulates i...
Zi Huang, Xiaofang Zhou, Dawei Song, Peter Bruza
BMCBI
2008
93views more  BMCBI 2008»
13 years 7 months ago
VirulentPred: a SVM based prediction method for virulent proteins in bacterial pathogens
Background: Prediction of bacterial virulent protein sequences has implications for identification and characterization of novel virulence-associated factors, finding novel drug/v...
Aarti Garg, Dinesh Gupta