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» Finding and Certifying Loops
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ECOOP
2012
Springer
11 years 9 months ago
Static Detection of Loop-Invariant Data Structures
As a culture, object-orientation encourages programmers to create objects, both short- and long-lived, without concern for cost. Excessive object creation and initialization can ca...
Guoqing (Harry) Xu, Dacong Yan, Atanas Rountev
BMCBI
2011
12 years 10 months ago
Dissecting protein loops with a statistical scalpel suggests a functional implication of some structural motifs
Background: One of the strategies for protein function annotation is to search particular structural motifs that are known to be shared by proteins with a given function. Results:...
Leslie Regad, Juliette Martin, Anne-Claude Camprou...
ICPP
1999
IEEE
13 years 11 months ago
Compiler Optimizations for I/O-Intensive Computations
This paper describes transformation techniques for out-of-core programs (i.e., those that deal with very large quantities of data) based on exploiting locality using a combination...
Mahmut T. Kandemir, Alok N. Choudhary, J. Ramanuja...
CF
2006
ACM
13 years 9 months ago
Intermediately executed code is the key to find refactorings that improve temporal data locality
The growing speed gap between memory and processor makes an efficient use of the cache ever more important to reach high performance. One of the most important ways to improve cac...
Kristof Beyls, Erik H. D'Hollander
BMCBI
2006
169views more  BMCBI 2006»
13 years 7 months ago
Beyond microarrays: Finding key transcription factors controlling signal transduction pathways
Background: Massive gene expression changes in different cellular states measured by microarrays, in fact, reflect just an "echo" of real molecular processes in the cell...
Alexander E. Kel, Nico Voss, Ruy Jauregui, Olga V....