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IJAIT
2008
99views more  IJAIT 2008»
13 years 7 months ago
Optimal Basic Block Instruction Scheduling for Multiple-Issue Processors Using Constraint Programming
Instruction scheduling is one of the most important steps for improving the performance of object code produced by a compiler. A fundamental problem that arises in instruction sch...
Abid M. Malik, Jim McInnes, Peter van Beek
ICDE
2003
IEEE
149views Database» more  ICDE 2003»
14 years 9 months ago
Indexing Weighted-Sequences in Large Databases
We present an index structure for managing weightedsequences in large databases. A weighted-sequence is defined as a two-dimensional structure where each element in the sequence i...
Haixun Wang, Chang-Shing Perng, Wei Fan, Sanghyun ...
IPPS
2006
IEEE
14 years 1 months ago
Multiple sequence alignment by quantum genetic algorithm
In this paper we describe a new approach for the well known problem in bioinformatics: Multiple Sequence Alignment (MSA). MSA is fundamental task as it represents an essential pla...
L. Abdesslem, M. Soham, B. Mohamed
BMCBI
2010
152views more  BMCBI 2010»
13 years 7 months ago
Apples and oranges: avoiding different priors in Bayesian DNA sequence analysis
Background: One of the challenges of bioinformatics remains the recognition of short signal sequences in genomic DNA such as donor or acceptor splice sites, splicing enhancers or ...
Jens Keilwagen, Jan Grau, Stefan Posch, Ivo Grosse
LCPC
2004
Springer
14 years 1 months ago
Empirical Performance-Model Driven Data Layout Optimization
Abstract. Empirical optimizers like ATLAS have been very effective in optimizing computational kernels in libraries. The best choice of parameters such as tile size and degree of l...
Qingda Lu, Xiaoyang Gao, Sriram Krishnamoorthy, Ge...