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» Fixed-Parameter Algorithms in Phylogenetics
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CEC
2003
IEEE
13 years 11 months ago
Phylogenetic trees using evolutionary search: initial progress in extending Gaphyl to work with genetic data
AbstractGaphyl is an application of evolutionary algorithms (EA's) to phylogenetics, an approach used by biologists to investigate evolutionary relationships among organisms. ...
Clare Bates Congdon, Kevin J. Septor
JCB
2007
92views more  JCB 2007»
13 years 7 months ago
Neighbor Joining Algorithms for Inferring Phylogenies via LCA Distances
Reconstructing phylogenetic trees efficiently and accurately from distance estimates is an ongoing challenge in computational biology from both practical and theoretical consider...
Ilan Gronau, Shlomo Moran
BMCBI
2008
130views more  BMCBI 2008»
13 years 7 months ago
A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
Background: The process of horizontal gene transfer (HGT) is believed to be widespread in Bacteria and Archaea, but little comparative data is available addressing its occurrence ...
Sheila Podell, Terry Gaasterland, Eric E. Allen
CATS
2008
13 years 8 months ago
Parameterized Complexity of the Clique Partition Problem
The problem of deciding whether the edge-set of a given graph can be partitioned into at most k cliques is well known to be NP-complete. In this paper we investigate this problem ...
Egbert Mujuni, Frances A. Rosamond
TSP
2008
166views more  TSP 2008»
13 years 7 months ago
Audio Denoising by Time-Frequency Block Thresholding
Abstract--Removing noise from audio signals requires a nondiagonal processing of time-frequency coefficients to avoid producing "musical noise." State of the art algorith...
Guoshen Yu, Stéphane Mallat, Emmanuel Bacry