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» Fixed-Parameter Algorithms in Phylogenetics
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SODA
2001
ACM
79views Algorithms» more  SODA 2001»
15 years 1 months ago
Performance study of phylogenetic methods: (unweighted) quartet methods and neighbor-joining
Katherine St. John, Tandy Warnow, Bernard M. E. Mo...
96
Voted
ALMOB
2008
85views more  ALMOB 2008»
15 years 15 days ago
Noisy: Identification of problematic columns in multiple sequence alignments
Motivation: Sequence-based methods for phylogenetic reconstruction from (nucleic acid) sequence data are notoriously plagued by two effects: homoplasies and alignment errors. Larg...
Andreas W. M. Dress, Christoph Flamm, Guido Fritzs...
BMCBI
2006
108views more  BMCBI 2006»
15 years 13 days ago
RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits
Background: Until today, analysis of 16S ribosomal RNA (rRNA) sequences has been the de-facto gold standard for the assessment of phylogenetic relationships among prokaryotes. How...
Hanno Teeling, Frank Oliver Glöckner
RECOMB
2010
Springer
15 years 7 months ago
Alignment-Free Phylogenetic Reconstruction
We introduce the first polynomial-time phylogenetic reconstruction algorithm under a model of sequence evolution allowing insertions and deletions—or indels. Given appropriate ...
Constantinos Daskalakis, Sébastien Roch
104
Voted
TCBB
2008
101views more  TCBB 2008»
15 years 8 days ago
Improved Layout of Phylogenetic Networks
Split networks are increasingly being used in phylogenetic analysis. Usually, a simple equal-angle algorithm is used to draw such networks, producing layouts that leave much room f...
Philippe Gambette, Daniel H. Huson