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» Fixed-Parameter Algorithms in Phylogenetics
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IPPS
2009
IEEE
14 years 2 months ago
Parallel reconstruction of neighbor-joining trees for large multiple sequence alignments using CUDA
Computing large multiple protein sequence alignments using progressive alignment tools such as ClustalW requires several hours on state-of-the-art workstations. ClustalW uses a th...
Yongchao Liu, Bertil Schmidt, Douglas L. Maskell
LION
2009
Springer
114views Optimization» more  LION 2009»
14 years 1 months ago
Substitution Matrices and Mutual Information Approaches to Modeling Evolution
Abstract. Substitution matrices are at the heart of Bioinformatics: sequence alignment, database search, phylogenetic inference, protein family classication are based on Blosum, P...
Stephan Kitchovitch, Yuedong Song, Richard C. van ...
PCI
2005
Springer
14 years 27 days ago
Web Service-Enabled Grid-Based Platform for Drug Resistance Management
HIV Drug Resistance testing has been established as a routine test in several cases. Estimation of genotypic resistance is a laborious task consisting of experimental procedure and...
Panagiotis Gouvas, G. Magiorkinis, Athanasios Bour...
BIBM
2008
IEEE
106views Bioinformatics» more  BIBM 2008»
13 years 9 months ago
Uncovering Genomic Reassortments among Influenza Strains by Enumerating Maximal Bicliques
The evolutionary histories of viral genomes have received significant recent attention due to their importance in understanding virulence and the corresponding ramifications to pu...
Niranjan Nagarajan, Carl Kingsford
BIB
2008
106views more  BIB 2008»
13 years 7 months ago
Biodiversity informatics: the challenge of linking data and the role of shared identifiers
A major challenge facing biodiversity informatics is integrating data stored in widely distributed databases. Initial efforts have relied on taxonomic names as the shared identifi...
Roderic D. M. Page