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» Fixed-Parameter Algorithms in Phylogenetics
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130
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IWPEC
2004
Springer
15 years 9 months ago
Perfect Path Phylogeny Haplotyping with Missing Data Is Fixed-Parameter Tractable
Abstract. Haplotyping via perfect phylogeny is a method for retrieving haplotypes from genotypes. Fast algorithms are known for computing perfect phylogenies from complete and erro...
Jens Gramm, Till Nierhoff, Till Tantau
BMCBI
2011
14 years 7 months ago
PhyloMap: an algorithm for visualizing relationships of large sequence data sets and its application to the influenza A virus ge
Background: Results of phylogenetic analysis are often visualized as phylogenetic trees. Such a tree can typically only include up to a few hundred sequences. When more than a few...
Jiajie Zhang, Amir Madany Mamlouk, Thomas Martinet...
129
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CORR
2007
Springer
165views Education» more  CORR 2007»
15 years 3 months ago
Comparison of Tree-Child Phylogenetic Networks
Abstract—Phylogenetic networks are a generalization of phylogenetic trees that allow for the representation of non-treelike evolutionary events, like recombination, hybridization...
Gabriel Cardona, Francesc Rosselló, Gabriel...
110
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STOC
2003
ACM
98views Algorithms» more  STOC 2003»
16 years 3 months ago
A sublinear algorithm for weakly approximating edit distance
We show how to determine whether the edit distance between two given strings is small in sublinear time. Specifically, we present a test which, given two n-character strings A and...
Tugkan Batu, Funda Ergün, Joe Kilian, Avner M...
97
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SODA
2010
ACM
224views Algorithms» more  SODA 2010»
16 years 27 days ago
Reconstructing approximate phylogenetic trees from quartet samples
Sagi Snir, Raphael Yuster