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» Fixed-Parameter Algorithms in Phylogenetics
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IWPEC
2004
Springer
14 years 23 days ago
Perfect Path Phylogeny Haplotyping with Missing Data Is Fixed-Parameter Tractable
Abstract. Haplotyping via perfect phylogeny is a method for retrieving haplotypes from genotypes. Fast algorithms are known for computing perfect phylogenies from complete and erro...
Jens Gramm, Till Nierhoff, Till Tantau
BMCBI
2011
12 years 11 months ago
PhyloMap: an algorithm for visualizing relationships of large sequence data sets and its application to the influenza A virus ge
Background: Results of phylogenetic analysis are often visualized as phylogenetic trees. Such a tree can typically only include up to a few hundred sequences. When more than a few...
Jiajie Zhang, Amir Madany Mamlouk, Thomas Martinet...
CORR
2007
Springer
165views Education» more  CORR 2007»
13 years 7 months ago
Comparison of Tree-Child Phylogenetic Networks
Abstract—Phylogenetic networks are a generalization of phylogenetic trees that allow for the representation of non-treelike evolutionary events, like recombination, hybridization...
Gabriel Cardona, Francesc Rosselló, Gabriel...
STOC
2003
ACM
98views Algorithms» more  STOC 2003»
14 years 7 months ago
A sublinear algorithm for weakly approximating edit distance
We show how to determine whether the edit distance between two given strings is small in sublinear time. Specifically, we present a test which, given two n-character strings A and...
Tugkan Batu, Funda Ergün, Joe Kilian, Avner M...